vd4mmind / multiOmicsIntegration

Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics

multiOmicsIntegration

Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics data

The datasets used in the manuscript can be downloaded from Zenodo Seal, Dibyendu, Das, Vivek, Goswami, Saptarshi, & De, Rajat. (2020). Datasets used for Multi-omics integration using Deep Learning and other state-of-the-art regression models (Version v1) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3712496

Currently there are 3 Python notebooks in this Github repository

1. Pre-processing.ipynb
2. DNAm_CNA_to_RNAseq.ipynb
3. DNAm_to_CNA.ipynb

The above notebooks can be used to run the codes used for multi-omics integration using Deep Learning and state-of-the-art regression methods.