ivivek87's repositories
multiOmicsIntegration
Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics
scRNAseq_Benchmark
Bench-marking classification tools for scRNA-seq data
scRNAseq_cell_cluster_labeling
Scripts to run and benchmark scRNA-seq cell cluster labeling methods
singleCellDataSets
This is a repository for all the single cell datasets that I am accuring from public repositories
SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
Single-cell-RNA-sequencing-of-human-kidney
R-code used for single-cell RNA-Seq analysis of kidney data.
Artificial-Intelligence-Deep-Learning-Machine-Learning-Tutorials
A comprehensive list of Deep Learning / Artificial Intelligence and Machine Learning tutorials - rapidly expanding into areas of AI/Deep Learning / Machine Vision / NLP and industry specific areas such as Climate / Energy, Automotives, Retail, Pharma, Medicine, Healthcare, Policy, Ethics and more.
bioc2020trajectories
Trajectory inference and differential expression over multiple conditions in scRNA-seq
E-MTAB-6141
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
genomics
Scripts, utilities and programs for genomic bioinformatics.
hypeR-workshop
Efficient, Scalable, and Reproducible Enrichment Workflows
mars
Discovering novel cell types across heterogenous single-cell experiments
PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
plantmetaBolGCMS
code repo for the Plant Science paper published on GC-MS
scCellTypeAnnotation
This repository will keep populating paper links and tool names that are currently in pre-print stage or published for Cell Type Identification, Annotation and Labeling.
scDataviz
scDataviz: single cell dataviz and downstream analyses
scptest_colab
Testing the SCP pipeline in Google Colab
scRNA-seq-datasets
Raw data with annotations
scRNA.seq.datasets
Collection of public scRNA-Seq datasets used by our group
scRNAseq-analysis-notes
my scRNAseq analysis notes
sgRNA_library
This repository contains the Google Colab notebook for single guide RNA library characterization
swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
TSCAN
Clone of the Bioconductor repository for the TSCAN package.
vd4mmind
Config files for my GitHub profile.