Center for Translational Data Science

bc-jupyterNotebook

cwl.go

forked from https://github.com/otiai10/cwl.go/

sc19-pfb-artifacts

Artifacts for SC19 paper about PFB

topmed-cwl

This is cwl pipeline for alignment potentially used for TopMed data analysis

AnVIL_datadictionary

augur

Pipeline components for real-time phylodynamic analysis

class-notebook

commons-sample-data

A repo to track various TOPMed and other datasets

covid-bioinformatics

Software tools to collect and analyze Coronavirus sequences using HMMs

csi-s3

A Container Storage Interface for S3

dev-bot

Slack bot to increase productivity

docker-baseimage-gui

A minimal docker baseimage to ease creation of X graphical application containers

docker-firefox

Docker container for Firefox

fencex

gen3-arranger

gen3 arranger server - graphql to elastic search

gen3-devops-jenkins

Keeping all utility self-service jobs for DevOps productivity

gen3sdk-R

IBDGC_demos

Demonstrations for the IBDGC Commons

mfence

Monitorable Fence

new_repo_test

whatever here

ohif-orthanc-app-example

orthanc-with-aws-s3-plugin

pdc_docs

Documentation for external users on how to access data stored in the ICGC / PDC commons (icgc.bionimbus.org).

pdc_tools

Scripts for interacting with the ICGC Data Commons (icgc.bionimbus,org), which hosts ICGC PCAWG and DREAM Challenge data.

pepper

Named after Pepper Potts. Set all your GitHub repos master branches to be protected.

qa-metrics

Dashboards and tools to improve observability

Ronald-and-Mert

rstudio

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

stage-landing-page