Center for Translational Data Science

indexd

Index service server

peregrine

GraphQL search API service

sheepdog

API for herding data submissions

hatchery

tube

ETL

data-simulator

dictionaryutils

python wrapper and metaschema for datadictionary

requestor

API to manage access requests

sower

Job dispatcher for Kubernetes

pelican

Sower jobs for PFB export & import

ssjdispatcher

SQS S3 Job Dispatcher

workspace-token-service

bio-nextflow

Nextflow research and development

datadictionary

Gen3 Generic Data dictionary

gen3utils

Utils for Gen3 commons management

cdis-python-utils

utilities to ease python code development

containers

genomel_pipelines

GenoMEL pipelines in Bionimbus

heal-platform-sdk

Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Atlas

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

cohort-middleware

Middleware to work with Atlas cohorts in Gen3

data-ecosystem-portal

datamodelutils

wrapper utils to initialize datamodel from remote dictionary

gen3datamodel

Translation layer between the GDC Data Dictionary and psqlgraph

google-bucket-manifest

Repos to store CDIS Google dataflow templates

manifestservice

create and read manifests from s3

prometheus-data-platform

Gen3 based UI for Prometheus Data Platform

thor

Gen3 Release Orchestrator

WebAPI

OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications