squidpy

There are 1 repository under squidpy topic.

• squidpy

  scverse / squidpy

  Spatial Single Cell Analysis in Python

  single-cell-rna-seqsingle-cell-genomicsspatial-transcriptomicsspatial-analysisimage-analysisdata-visualizationsquidpy
  Language:Python 391

• theislab / ncem

  Learning cell communication from spatial graphs of cells

  tensorflowgnnglmcvaeencoder-decoder-modelscanpysquidpycell-cell-communicationcell-cell-interaction
  Language:Python 97
• Nuwa

  Nuwa-genomics / Nuwa

  A bioinformatics web app for single cell RNA seq analysis.

  bioinformaticsdata-sciencedeep-learningscanpysingle-cellspatial-transcriptomicsstreamlittrajectory-inferencetranscriptomicsweb-uisquidpy
  Language:Python 1

• karan-nanda / SquidPy

  Explore spatial organization of a mouse brain coronal section with Scanpy and Squidpy in this GitHub repository. Analyze cell interactions, visualize distributions, and uncover patterns using various data exploration and spatial analysis techniques.

  bioinformaticscoronaldissectionscanpysquidpytranscriptomics
  Language:Jupyter Notebook