read-alignment

There are 0 repository under read-alignment topic.

• at-cg / PanAligner

  Long read aligner for cyclic and acyclic pangenome graphs

  pangenomeread-alignmentvariation-graphs
  Language:C 34

• CMU-SAFARI / GenASM

  Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis" at https://people.inf.ethz.ch/omutlu/pub/GenASM-approximate-string-matching-framework-for-genome-analysis_micro20.pdf

  bitap-algorithmgenome-sequence-analysisread-mappinghw-sw-co-designpre-alignment-filteringapproximate-string-matchingread-alignment
  Language:C 30

• sanger-tol / readmapping

  Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

  genomicsnextflowpipelineread-alignment
  Language:Nextflow 8

• TC-Hewitt / OatCrownRust

  Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.

  genomic-data-analysisgwasngs-analysisread-alignmentsnp-genotypingsynteny
  Language:Python 0

• jungsoh / high-throughput-sequence-data-handling-course

  Material used for a course on handling high-throughput genomic data handling, covering DNA sequence assembly, RNA-seq data analysis, metagenomics, and read alignment

  high-throughput-sequencingmarker-gene-analysismetagenomic-analysisread-alignmentrna-seq-analysissequence-assembly
  Language:HTML