pysam

There are 0 repository under pysam topic.

• PlatonB / ld-tools

  ld-tools: toolkit for linkage disequilibrium calculation designed to work locally

  linkage-disequilibriumbioinformaticsviggldlinkld-calculatorpythonsqlitehaploregldsnppysamld-tools
  Language:Python 3

• Deivmercer / pileup

  Progetto di Elementi di Bioinformatica, A.A. 2021/2022

  university-projectunimibbioinformaticspysam
  Language:Jupyter Notebook 1

• etkayapar / bamRefine

  Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog

  ancient-dnasamtoolspysampopulation-genomicspythonpython3
  Language:Python 1

• aobermayer4 / NGSDataParsing

  Various scripts for working with NGS data in file formats such as VCF, BAM/SAM, and JSON

  bam-filesjsonngsngs-analysisnumpyospandaspysampythonsam-filesvcf-files
  Language:Python 0

• awells-uva / capstone_2022

  Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.

  bioinformaticsbiopython-libraryhisat2pysam
  Language:Jupyter Notebook 0

• CHRUdeLille / pysam_containers

  Pysam module (python2.7) singularity container

  singularitypysampython2singularity-hub
  Language:Shell 0

• fpoli / genome-track

  Bioinformatics CLI tool to generate WIG tracks from SAM/BAM files

  bioinformaticswig-trackspysamgenome-tracksequence-coverage
  Language:Python 0

• tombch / basecount

  Per-position and summary statistics for BAM files

  bambasecountbioinformaticspysam
  Language:Python 0

• petermchale / genomics-web-app

  vue app with flask REST api to process genomic data

  spavuexaxiosvue-materialsnvflask-apikmer-countingpysamvuejsplotlyjs
  Language:Jupyter Notebook