protein-stability

There are 1 repository under protein-stability topic.

elaspic / elaspic2
Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.
mutations protein-structure protein-stability binding-affinity variant-effect-prediction protein bioinformatics
Language:Jupyter Notebook 18
chaconlab / korpm
Predicting the effect of mutations on protein stability using a simple orientational potential.
structural-bioinformatics protein-structure protein-stability mutations
Language:C++ 15
mtplr / pyMol-cookbook
Some notes (cookbook) for pyMol. Protein Crystallography course.
pymol protein-structure protein-ligand-interactions cookbook protein-stability
14
elaspic / elaspic
Predicting the effect of mutations on protein stability and protein-protein interaction affinity.
bioinformatics protein-stability computational-biology binding-affinity mutations
Language:Python 9
sambitmishra0628 / PSP-GNM
Prediction of protein thermodynamic stability changes upon mutations through a Gaussian Network Model simulating protein unfolding behavior
elastic-network-models nonsynonymous prediction-algorithm protein-dynamics protein-stability protein-structure amino-acid-mutation
Language:Python 8
narodkebabci / gRoR
A workflow to get rid of redundant mutations
protein-stability reduced-alphabet
Language:R 7
dohlee / abyssal-pytorch
Implementation of Abyssal, a deep neural network trained with a new "mega" dataset to predict the impact of an amino acid variant on protein stability.
bioinformatics computational-biology protein protein-language-model protein-sequences protein-stability biology deep-learning reproduction reproduction-code
Language:Jupyter Notebook 6
dohlee / rasp-pytorch
Reimplementation of RaSP, a deep neural network for rapid protein stability prediction, in PyTorch.
artificial-intelligence bioinformatics protein protein-stability self-supervised-learning
Language:Python 4
dohlee / snakemake-cartesian-ddg
Snakemake pipeline for Rosetta 'cartesian-ddg' protocol for protein stability prediction upon mutations.
bioinformatics bioinformatics-pipeline protein protein-stability protein-structure rosetta
Language:Python 3
latticetower / stable-mutants
https://biohackathon.biolib.com/event/2021-protein-edition/ - team "house-of-mutants" - task "Predicting multi-mutant protein stability"
miniprotein protein-stability
Language:Jupyter Notebook 3
dacarlin / bglb_thermal
Large data set of thermal stabilities for mutants of BglB, and associated publication
open-science protein-design protein-stability
Language:Jupyter Notebook 2
n1ghtf4l1 / mutating-doodle
Identify the thermostable mutations in enzymes
enzyme-stability-prediction kaggle-competition machine-learning novozymes protein-stability
Language:Jupyter Notebook 2
bikman / fs-mutation-prediction
Official repository for the paper "Few-shot Prediction of the experimental functional measurements for proteins with single point mutations".
bioinformatics mutations protein-stability deep-learning few-shot-learning neural-networks
Language:Python 1

protein-stability

elaspic / elaspic2

chaconlab / korpm

mtplr / pyMol-cookbook

elaspic / elaspic

sambitmishra0628 / PSP-GNM

narodkebabci / gRoR

dohlee / abyssal-pytorch

dohlee / rasp-pytorch

dohlee / snakemake-cartesian-ddg

latticetower / stable-mutants

dacarlin / bglb_thermal

n1ghtf4l1 / mutating-doodle

bikman / fs-mutation-prediction