Quan-Xing Liu's repositories
Phase-separation-patterned-ground
This repository provides the OpenCL and Matlab codes that simulate the phase separation model 1 and model 2 on our manuscript. "Ice needles weave patterns of stones in freezing landscapes" by Anyuan Li, Norikazu Matsuoka, Fujun Niu, Jing Chen, Zhenpeng Ge, Wensi Hu, Desheng Li, Bernard Hallet, Johan van de Koppel, Nigel Goldenfeld, and Quan-Xing Liu (2021), PNAS.
MarineReserves
Eco-evolutionary dynamics of a simple size-structured population mode including a marine reserve
Self-organized-crack-patterns
This repository provides the data and R codes that simulate the self-organized crack patterns on our manuscript. "Biophysical self-organization amplifies the resilience of salt marshes" by Kang Zhang, Jiaguo Yan, Qiang He, Chi Xu, Johan van de Koppel, Bo Wang, Baoshan Cui, and Quan-Xing Liu.
assessing-global-fisheries
Materials for Ovando et al. (2021) "Improving estimates of the state of global fisheries depends on better data" Fish and Fisheries
cellpylib
A library for working with Cellular Automata, for Python.
coral
Parallel spectral solver for partial differential equations in the plane layer geometry.
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
DeepTrack2
DeepTrack-2.0
FishLife
Estimate fish traits for all marine fish species globally
information-cascades
Examining how information cascades driven by polarized media can cause "echo chambers" to emerge in social networks. Agent-based model and empirical data collection from Twitter.
LEM-wLE
A landscape evolution model that incorporates lateral erosion
marlin
A package for simulating 2-D populations of fauna, fisheries, and marine protected areas
population-effects-of-mpas
Repository for Ovando et al. (2021) - The Population Effects of Marine Protected Areas
pycma
Python implementation of CMA-ES
rreusser.github.io
rreusser.github.io
simba
SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
spatialRF
R package to fit spatial models with Random Forest
spatialwarnings
An R package to compute spatial early-warning signals of ecosystem degradation
stardist
StarDist - Object Detection with Star-convex Shapes
TagLab
A CNN based image segmentation tool oriented to marine data analysis