ligand-receptor

There are 2 repositories under ligand-receptor topic.

saeyslab / nichenetr
NicheNet: predict active ligand-target links between interacting cells
cell-cell-communication data-integration gene-expression intercellular-communication ligand-receptor ligand-target network-inference rna-seq single-cell-omics single-cell-rna-seq
Language:R 453
saezlab / liana
LIANA: a LIgand-receptor ANalysis frAmework
ligand-receptor cell-cell-communication omnipath cellphonedb cellchat liana
Language:R 160
saezlab / liana-py
LIANA+: an all-in-one framework for cell-cell communication
cell-cell-communication ligand-receptor python single-cell single-cell-rna-seq spatial spatialomics
Language:Python 138
saeyslab / multinichenetr
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
cell-cell-communication differential-expression intercellular-communication intercellular-signaling ligand-receptor ligand-receptor-interaction ligand-target scrna-seq single-cell single-cell-rna-seq systems-biology cell-cell-interaction
Language:HTML 98
ZJUFanLab / CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
single-cell rna-seq data-analysis ligand-receptor cell-cell-interaction cell-cell-communication database toolkit
Language:R 25
stevexniu / scMatchmaker
Cell-Cell Interaction Discovery in Single Cell RNA Sequencing
ligand-receptor rna-seq rstats single-cell
Language:R 7
VCCRI / scTalk
Intercellular communication analysis for scRNA-seq data
scrna-seq scrna-seq-analysis intercellular-communication ligand-receptor
Language:R 6
chiblyaa / LigandReceptor
Ligand-Receptor Analysis for scRNAseq data
scrnaseq ligand-receptor
Language:R 1
saezlab / ccc_protocols
LIANA x Tensor-cell2cell Protocols
cell-cell-communication single-cell-omics liana single-cell single-cell-rna-seq tensor-decomposition tensor-cell2cell ligand-receptor
Language:Jupyter Notebook 1
Amirreza-Mousavi / FjTAL_Virtual_Screening_QND
A quick and dirty virtual screening task for potential ligands of Flavobacterium johnsoniae Tyrosine Ammonia Lyase (FjTAL)
molecular-docking autodock-vina virtual-screening ligand-receptor r shell ligand-receptor-interaction ligand-screening
Language:Shell 0
jssweller / DrugHIVE
DrugHIVE: Structure-based drug design with a deep hierarchical generative model
drug-design drug-discovery generative-ai generative-model hierarchical-models ligand-receptor ligand-receptor-interaction protein-structure python pytorch structure-based structure-based-drug-design
Language:Python