burrows-wheeler-transformation

There are 0 repository under burrows-wheeler-transformation topic.

ElizaLo / Data-Compression-Methods
Hamming, Huffman and etc algorithms
huffman-algorithm hamming-code comprehension data-compression algorithms lzw-compression lzw-algorithm huffman-coding huffman-compressor hamming-coding hamming-python burrows-wheeler-transform burrows-wheeler-transformation burrow-wheeler-aligner lempel-ziv lempel-ziv-welch lzw-compressor lzw-codes huffman-compression-algorithm huffman-coding-algorithm
Language:Jupyter Notebook 7
sentenzo / bzip2
A (rookie makeshift improvised amateur suboptimal crude non-production-ready) bzip2 compression algorithm implementation from scratch.
bzip2 compression burrows-wheeler-transformation huffman-coding mtf-compression rle-compression move-to-front
Language:Python 3
weissenberger / bzip2gpu
Fast, GPU-based decompressor for bzip2 streams.
bzip2 cuda data-compression datacompression decompression-library decompressor gpu gpu-acceleration gpu-computing archiving burrows-wheeler-transform burrows-wheeler-transformation bwt bwt-transform compression compression-algorithm huffman huffman-coding mtf mtf-compression
Language:Cuda 3
AndreaRubbi / Burrows-Wheeler-implementation
Python implementation of the Burrow Wheeler Algorithm with a GUI
burrows-wheeler-transform burrows-wheeler-transformation bioinformatics algorithms gui tkinter gif-animation
Language:Python 1
lars76 / pysais-utf8
Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
burrows-wheeler-transform burrows-wheeler-transformation bwt lcp lcp-array longest-common-prefix sais suffix-array suffixarray
Language:C 1
WillardFord / wf-align-CSE185
This tool aligns reads back to a reference genome. It is also my final project for CSE 185 Advanced Bioinformatics Lab. Won Best Presentation Award among 60+ student projects.
bioinformatics genomics sequence-alignment burrows-wheeler-transformation
Language:Jupyter Notebook 1
ZgzInfinity / Adhara
Practices of Algorithm for hard problems
java cplusplus bash algorithms karger karger-stein-algorithm suffix-array skew burrows-wheeler-transformation move-to-front bzip2
Language:Java 1
LauraRuffoni / ClientServer-Project
Implement a server (along with a corresponding client), that accepts a DNA sequence and returns its Burrows Wheeler Transform (BWT). It should also accept a BWT and return the corresponding original DNA sequence.
burrows-wheeler-transform burrows-wheeler-transformation client dna-sequences multiprocessing-library python server
Language:Python 0
MikoRabago / Bioinformatics-6-COMP-4312e-
A repository containing all the file projects that I have for the Bioinformatics 6 (COMP 4312e) course.
bioinformatics burrows-wheeler-transformation combinatorial-algorithms dna-mutation hidden-markov-models hmm-sequence-alignment
0
weihao94 / Burrows-Wheeler-Transformation-and-its-Applications
MA3288 Advanced Undergraduate Research Opportunites (UROPS) in Mathematics I
burrows-wheeler-transformation graph-theory python mathematics
0
dbelling / genomics
Several computational genomics projects
matlab genomics viterbi-algorithm burrows-wheeler-transformation needleman-wunsch-algorithm
Language:MATLAB
rohan-chandrashekar / String-Matching-using-Burrows-Wheeler-Alignment-BWA
A Python-based implementation of the Burrows-Wheeler Alignment (BWA) algorithm for DNA sequence matching. This project leverages core data structures including the Burrows-Wheeler Transform (BWT), Suffix Array (SA), and auxiliary arrays (C, Occ) to enable efficient and accurate substring matching. It focuses on an unoptimized, recursive depth-first
burrows-wheeler-transformation python string-matching suffix-array
Language:Python