Jann Miko Ingel Rabago's repositories
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
BIO-1311-Introduction-to-Biology
A repository containing all the file projects that I have for the BIO 1311: Introduction to Biology course.
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
Computational-Molecular-Medicine-Course-Project
Machine Learning model to predict lymph-node metastasis
hello-world
My Hello World project.
Basic-Bioinformatics-Bioinformatics-1-BIO-4312d
A repository containing all the file projects that I have for the Basic Bioinformatics (Bioinformatics 1) (BIO 4312d) course.
Bioinformatics-2-COMP-4312a
A repository containing all the file projects that I have for the Bioinformatics 2 (COMP 4312a) course.
Bioinformatics-3-COMP-4312b
A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.
Bioinformatics-4-COMP-4312c
A repository containing all the file projects that I have for the Bioinformatics 4 (COMP 4312c) course.
Bioinformatics-5-COMP-4312d
A repository containing all the file projects that I have for the Bioinformatics 5 (COMP 4312d) course.
Bioinformatics-6-COMP-4312e-
A repository containing all the file projects that I have for the Bioinformatics 6 (COMP 4312e) course.
albinotonnina.com
source-code
breast_cancer_classifier
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
cbioportal
cBioPortal for Cancer Genomics
claude
The CLAuDE model
dockstring
A Python package for molecular docking with an extensive, highly-curated dataset and a set of realistic benchmark tasks for drug discovery.
moalmanac
Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medicine
moalmanac-paper
Analyses related to Reardon et al. 2020, Clinical interpretation of integrative molecular profiles to guide precision cancer medicine
NCRF
Cancer metastasis detection with neural conditional random field (NCRF)
Personalized-Medicine-Redefining-Cancer-Treatment
Personalized-Medicine-Redefining-Cancer-Treatment is a problem of classifying the given genetic mutations based on the literature available in the medical domain into one of the given 9 classes. In reality, The molecular pathologist searches for evidence in the medical literature that is relevant to the given genetic variations. Finally, this molecular pathologist spends a huge amount of time analyzing the evidence related to each of the variations to classify them. The goal of this case study is to replace the last step with a machine learning model.
plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Salentin et al. (2015), https://www.doi.org/10.1093/nar/gkv315
ResearchKit
ResearchKit is an open source software framework that makes it easy to create apps for medical research or for other research projects.
superfolder-covid-mrna-vaccines
SuperFolder COVID mRNA vaccines, stabilized for in vitro storage and shipping