Funke lab

gunpowder

A library to facilitate machine learning on multi-dimensional images.

lsd

🌈

daisy

Block-wise task scheduling for large nD volumes.

motile

Multi-Object Tracker using Integer Linear Equations

cellulus

Unsupervised Instance Segmentation in Microscopy

synister

Neurotransmitter prediction from EM.

funlib.show.neuroglancer

Scripts and helpers for the neuroglancer WebGL viewer.

dacapo

funlib.evaluate

motile_napari_plugin

A napari plugin for tracking with motile

motile_toolbox

A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

funlib.persistence

Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

ilpy

Unified python wrappers for popular ILP solvers

linajea_experiments

Cell Tracking Experiments Scripts

blinx

funlib.segment

Tools to segment graphs and volumes

napari-cellulus

A napari plugin for cellulus

funlib.geometry

A package for Coordinates, Rois and common operations in Coordinate spaces

latex_template

A minimal LaTeX document to be used as a template for papers.

pycookie

A cookie cutter repository for python projects.

spatial_graph

A spatial graph datastructure for python

stargan-v2

StarGAN v2 - Official PyTorch Implementation (CVPR 2020)

witty

A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

blinx_paper

blinx paper

blinx_sparkle_stats

transformer models gone blinky

elegraph

fictus.aggregatum

A dataset of fictional cells with protein aggregates.

ilpy-feedstock

livseg

napari

napari: a fast, interactive, multi-dimensional image viewer for python