Funke lab (funkelab)

Funke lab

funkelab

Geek Repo

Janelia Research Campus

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Funke lab's repositories

gunpowder

A library to facilitate machine learning on multi-dimensional images.

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lsd

🌈

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daisy

Block-wise task scheduling for large nD volumes.

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motile

Multi-Object Tracker using Integer Linear Equations

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cellulus

Unsupervised Instance Segmentation in Microscopy

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synister

Neurotransmitter prediction from EM.

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funlib.show.neuroglancer

Scripts and helpers for the neuroglancer WebGL viewer.

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motile_napari_plugin

A napari plugin for tracking with motile

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motile_toolbox

A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

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funlib.persistence

Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

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ilpy

Unified python wrappers for popular ILP solvers

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linajea_experiments

Cell Tracking Experiments Scripts

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funlib.segment

Tools to segment graphs and volumes

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napari-cellulus

A napari plugin for cellulus

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funlib.geometry

A package for Coordinates, Rois and common operations in Coordinate spaces

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latex_template

A minimal LaTeX document to be used as a template for papers.

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pycookie

A cookie cutter repository for python projects.

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spatial_graph

A spatial graph datastructure for python

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stargan-v2

StarGAN v2 - Official PyTorch Implementation (CVPR 2020)

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witty

A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.

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blinx_paper

blinx paper

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blinx_sparkle_stats

transformer models gone blinky

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fictus.aggregatum

A dataset of fictional cells with protein aggregates.

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napari

napari: a fast, interactive, multi-dimensional image viewer for python

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