tlambert03 / nd2

Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction

https://tlambert03.github.io/nd2

tlambert03/nd2 Issues

[test-bot] pip install --pre is failing
Closed a month ago
How to convert ROI coordinates from relative to pixels
Updated a month ago3
[test-bot] pip install --pre is failing
Closed 2 months ago
[test-bot] pip install --pre is failing
Closed 3 months ago
[test-bot] pip install --pre is failing
Closed 3 months ago1
Issue with saving nd2 to ome-tiff
Closed 3 months ago1
Error with saving nd2 file as ome-tiff file
Closed 3 months ago2
[test-bot] pip install --pre is failing
Closed 3 months ago
Save a single channel in nd2 to numpy
Closed 3 months ago1
todo: turn color integers into tuples (or something meaningful)
Closed 4 months ago
feat: export to OME-TIFF, include full metadata as StructuredAnnotation
Closed 4 months ago
todo: improve handling of files with subloops
Updated 5 months ago
Missing axis
Closed 5 months ago10
[test-bot] pip install --pre is failing
Closed 5 months ago
bioio-nd2 failing to load from large file
Closed 5 months ago1
[test-bot] pip install --pre is failing
Closed 5 months ago
[test-bot] pip install --pre is failing
Closed 7 months ago
[test-bot] pip install --pre is failing
Closed 7 months ago
Implement sub-frame read/chunking
Updated 8 months ago12
[test-bot] pip install --pre is failing
Closed 8 months ago
[test-bot] pip install --pre is failing
Closed 9 months ago
[test-bot] pip install --pre is failing
Closed 10 months ago
Coordinates for RoiShapeType.Polygon not showing
Closed 10 months ago3
[test-bot] pip install --pre is failing
Closed 10 months ago
[test-bot] pip install --pre is failing
Closed 10 months ago
[test-bot] pip install --pre is failing
Closed 10 months ago
feature: implement lazy loading for binary data
Updated 10 months ago
order of axes
Closed 10 months ago8
Getting ND2 series images in the order they were captured
Closed 10 months ago3
Difference between NETimeLoop and TimeLoop?
Closed a year ago8
[test-bot] pip install --pre is failing
Closed a year ago
[test-bot] pip install --pre is failing
Closed a year ago
[Task] Add benchmarks
Closed a year ago1
[test-bot] pip install --pre is failing
Closed a year ago
[test-bot] pip install --pre is failing
Closed a year ago
Package not found on conda-forge channels
Closed a year ago4
bug: Lim_FileGetAttributes failing in certain linux environments
Closed a year ago4
[test-bot] pip install --pre is failing
Closed a year ago
liblimfile.so: cannot open shared object file on CentOS
Closed 2 years ago3
File handle left open when an nd2 file fails to read
Closed 2 years ago18
[test-bot] pip install --pre is failing
Closed 2 years ago
please pull from main... the download script was recently updated:
Closed 2 years ago5
cannot find metadata
Closed 2 years ago3
test data not found
Closed 2 years ago2
[test-bot] pip install --pre is failing
Closed 2 years ago
ValueError for the big 2d image in the get_frame method
Closed 2 years ago3
[test-bot] pip install --pre is failing
Closed 2 years ago
error while loading nd2 image
Closed 2 years ago9
[test-bot] pip install --pre is failing
Closed 2 years ago
Some datasets appear skewed in Ubuntu
Closed 2 years ago3