tgstoecker

pyscript

Try PyScript: https://pyscript.com Examples: https://tinyurl.com/pyscript-examples Community: https://discord.gg/HxvBtukrg2

t81_558_deep_learning

T81-558: Keras - Applications of Deep Neural Networks @Washington University in St. Louis

stylegan2-ada-pytorch

StyleGAN2-ADA - Official PyTorch implementation

useful-sed

Useful sed scripts & patterns.

awesome-quarto

A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

OrthoFinder

Phylogenetic orthology inference for comparative genomics

collapse

Advanced and Fast Data Transformation in R

Frustration-One-Year-With-R

An extremely long review of R.

ffq

A tool to find sequencing data and metadata from public databases.

gopro_as_webcam_on_linux

Allows to use your GoPro camera as a webcam on linux

noodles

Bioinformatics I/O libraries in Rust

shinycssloaders

⌛ Add loading animations to a Shiny output while it's recalculating

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

serratus

Ultra-deep search for novel viruses

conflicted

An alternative conflict resolution strategy for R

GENESPACE

SimpleTidy_GeneCoEx

A simple gene co-expression analyses workflow powered by tidyverse and graph analyses

loopurrr

Translate purrr functions into regular for loops

containerize-conda

Turn an existing conda environment into a Singularity container

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

vembedr

Functions to Embed Video in HTML

arrow-dplyr

A quick lightning talk on using arrow and dplyr together

palmerpenguins-useR-2022

Slides from our talk at the useR 2022 conference on "The Untold Story of palmerpenguins"

tinselR

An Amazing Shiny App

strspy

STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.

ncbench-workflow

quantseqpool_analysis

Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.

AHRD_Snakemake

Snakemake wrapper for AHRD

celloscope

a R shiny based web application for visualization of scRNA-Seq data