Giters
zaeleus
/
noodles
Bioinformatics I/O libraries in Rust
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Stargazers:
472
Watchers:
23
Issues:
206
Forks:
52
zaeleus/noodles Issues
Can support flush method on writer ?
Closed
a month ago
Comments count
3
Parsing VCF fails for ID in header
Closed
2 months ago
Comments count
3
noodles sam successfully read the recording but failed to write it
Closed
6 months ago
Comments count
2
About method names of `noodles_sam::alignment::record::Flags`
Closed
3 months ago
Comments count
2
BCF and VCF `record_bufs` return different `RecordBuf`s
Closed
2 months ago
Comments count
2
IUPAC codes in VCF REF field
Closed
2 months ago
Comments count
1
`gff::AsyncReader` gated by async feature
Closed
2 months ago
Comments count
2
Add Async GFF Reader and/or expose lazy record from string?
Closed
2 months ago
Comments count
2
Reading entries of file into preallocated buffer
Closed
2 months ago
Comments count
3
Missing newlines in `header::record::write_other` when writing collections
Closed
3 months ago
Comments count
1
How to set tag with value in noodles::bam?
Closed
3 months ago
Comments count
2
`sam::header::programs` module is private
Closed
3 months ago
Comments count
1
Unexpected EOF on BCF File
Closed
3 months ago
Comments count
2
`impl<'a> From<bam::record::Name<'a>> for sam::alignment::record_buf::Name` includes trailing NUL
Closed
3 months ago
Comments count
1
Docs typo
Closed
4 months ago
Comments count
2
Getting raw record lines with lazy records
Closed
4 months ago
Comments count
2
sam/io/writer/record: Increase visibility of SAM record CIGAR string serializer
Closed
4 months ago
Comments count
2
record_buf object to sam::Record object?
Closed
4 months ago
Comments count
2
util feature
Closed
4 months ago
Comments count
4
question: how to convert cigar from bytes.
Closed
5 months ago
Comments count
4
bgzf MultiThreadedReader Missing Error Message
Closed
4 months ago
Comments count
2
Async BGZF readers eagerly evaluate blocks
Closed
4 months ago
Comments count
2
migrating from 0.49 to 0.65: generating invalid BAM files
Closed
4 months ago
Comments count
2
bgzf/multithreaded_writer: Add builder
Closed
5 months ago
Comments count
1
Why `Flags::PROPERLY_ALIGNED` instead of `Flags::PROPERLY_PAIRED` as name?
Closed
5 months ago
Comments count
2
BGZF invalid header really strict
Closed
5 months ago
Comments count
6
`Send`-able `Repository`?
Closed
5 months ago
Comments count
2
Fixed-length `Character` fields
Updated
5 months ago
Comments count
2
Installation error
Closed
6 months ago
Comments count
2
Alignment span calculation (bug or misunderstanding)
Closed
6 months ago
Comments count
4
noodles bam failled to write record with large mapping position.
Closed
6 months ago
Comments count
1
Seamless parsing of BAM/SAM
Closed
6 months ago
Comments count
4
Documentation is opaque on 0 vs 1 indexing, and whether regions are right-inclusive or not.
Updated
6 months ago
Comments count
1
noodles implementation is slower than rust-htslib, did I do something suboptimal?
Closed
6 months ago
Comments count
5
Question: different coalescing of bytes for index queries?
Closed
7 months ago
Comments count
2
Lazy reading of BAM records requires reading of the header first
Closed
7 months ago
Comments count
1
Add underlying reader access for CRAM `AsyncReader`
Closed
8 months ago
Comments count
1
Concurrent reading/decompression of BAM files.
Closed
8 months ago
Comments count
3
Build Error on Windows
Closed
8 months ago
Comments count
1
csi: tabix header indices are off by one
Closed
8 months ago
Comments count
2
How to index a VCF statically or on the fly
Updated
8 months ago
Comments count
4
csi/writer: End position of a chunk is using wrong virtual position
Closed
8 months ago
Nondeterministic TBI index creation
Closed
9 months ago
Comments count
1
sam/record/data/field/tag: Add const initializer
Closed
10 months ago
Comments count
2
How to extract pileup information from a bam file?
Closed
10 months ago
Comments count
2
Should record::data::field::tag::other be public?
Closed
a year ago
Comments count
7
Question about number in META Lines
Closed
10 months ago
Comments count
1
Noodles-vcf generates invalid record error on PEDIGREE header
Closed
10 months ago
Comments count
4
query_unmapped fails
Closed
10 months ago
Comments count
3
query sorted bam for unmapped reads
Closed
a year ago
Comments count
1
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