snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

snakemake-workflows/rna-seq-kallisto-sleuth Issues

Libcrypto.so.1.1 not available?
Closed 4 months ago5
cutadapt not available?
Closed 5 months ago3
Error in rule diffexp_datavzrd
Updated 5 months ago1
InputFunctionException in line 29 .../quant.smk
Updated 7 months ago1
Whitespaces in config/units.tsv
Closed 7 months ago3
Missing input files for rule kallisto_index:
Closed a year ago2
can base_level be multiple if has many groups?
Closed a year ago2
config.yaml is not part of the release download
Closed 2 years ago1
ValidationError: 'nperm' is a required property
Closed 2 years ago3
problem with creating new copy as a template
Closed 4 years ago1
Get rid of checkpoints
Updated 4 years ago
test if SIGNOR database can be used by SPIA pathway enrichment analysis
Updated 4 years ago
Biomart-provoked errors in sleuth-init
Closed 4 years ago2
Docker run fail when using the "use this template" import
Closed 4 years ago2
Changes in `units.tsv` do not promt a rerun of the workflow
Updated 4 years ago
conda command not available despite singularity
Closed 5 years ago3
I wonder if you guys had plans to add annotation to the transcriptome?
Updated 5 years ago1