Tyll Stöcker's repositories
A2TEA.WebApp
R Shiny web application for the inspection, filtering & analysis of results generated by the A2TEA pipeline
A2TEA.Workflow
Automated Assessment of Trait-specific Evolutionary Adaptations
WEScropbio
As part of a set of analysis pipeline comparisons organized by the West German Genome Center, this particular workflow is designed to analyze Whole Exome Sequencing samples.
advanced-shiny
🤹 Shiny tips & tricks for improving your apps and solving common problems
AHRD_Snakemake
Snakemake wrapper for AHRD
april_tyll_blog
April and Tyll's Food & Travel Blog
CAFE5
Version 5 of the CAFE phylogenetics software
cheatsheets
RStudio Cheat Sheets
containers-introduction-training
Course website "Docker and Singularity for reproducible research: getting started with containers"
MuWU
Mu-seq Workflow Utility
GenomicDistributions
Calculate and plot distributions of genomic ranges
ipoolseq-pipeline
A pipeline for the analysis of iPool-Seq data
LearningBayes
An introduction to Bayesian statistics
mergAHRD
Merging tool for AHRD output tables
micro
A modern and intuitive terminal-based text editor
mitra
mapping (MuWU) insertions on different reference assemblies
Rust_fun
Collection of learning material and personal projects all about Rust
sarlaccPit
Useful code snippets and tricks for the Microsoft world: Azure, PowerShell, M365, etc.
SIB_course_nextflow_Nov_2021
Nextflow course 2021
single-cell-training
Website hosted at https://sib-swiss.github.io/single-cell-training/latest/
trial_quarto_progress_report_24_08_22
A first fun and short presentation done with quarto
useful-sed
Useful sed scripts & patterns.
Yu2021NaturePlants
Scripts for WGCNA network analysis and correlation with microbial taxonomy traits