telatin

yabai

A tiling window manager for macOS based on binary space partitioning

just

🤖 Just a command runner

github-trends

🚀 Level up your GitHub profile readme with customizable cards including LOC statistics!

mlx-examples

Examples in the MLX framework

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

gggenomes

A grammar of graphics for comparative genomics

termshot

Creates screenshots based on terminal command output

bactopia

A flexible pipeline for complete analysis of bacterial genomes

RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

docopt.nim

Command line arguments parser that will make you smile (port of docopt to Nim)

MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

hostile

Precise host read removal

figuro

Experimental UI Library for Nim

inphared

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

taxoniq

Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data

proovframe

frame-shift correction for long-read (meta)genomics

assemblycomparator2

🦠📇 Genomes to report pipeline - for Bacteria and Archaea

zDB

zDB: comparative bacterial genomics made easy

graphanalyzer

This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED database.

StORF-Reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

nextflow-template-repository

GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter template

webinarpipeline

Please don't break!!

nim-gzfile

simple reader and writer for gzipped (and regular) files

nimedlib

Nim wrapper for the Edlib library

nim

Nim compiler action

Racoon

Simple dataframes in nim

nf-boilerplate

A minimal template for Nextflow based project.

nf-ont-taxamap

Taxonomic profiling ONT metagenomics reads using minimap2

phylo-methods

multiplex_blast_search