RyanCook94 / inphared

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

RyanCook94/inphared Issues

Regarding genome comparison
Closed 5 months ago
archive of datasets
Closed 6 months ago1
get_closest_relatives.pl gives an error to rebuild the index
Closed 8 months ago6
FLiP phages are missing from the database
Closed 8 months ago3
get_closest_relatives.pl --max parameter not set properly
Closed 8 months ago7
link not work
Closed 8 months ago1
NoSuchBucketADM_sharetx00000e9b2255cb6a0e415-0064c3a5c9-13cbcfd7-s3-bham13cbcfd7-s3-bham-s3
Closed a year ago1
connection timeout fail with data download
Closed a year ago5
some issues with list of complete genomes
Updated 2 years ago
Unable to download latest version of database (version: 2Nov2022)
Closed 2 years ago3
Access denied to November 2022 dataset
Closed 2 years ago5
Weird characters in 1Aug2022_data.tsv
Closed 2 years ago5
Download error: HTTP ERROR 403: Forbidden
Closed 2 years ago9
Non viral sequences & genome fragments
Closed 2 years ago3
vCONTACT2 genome_by_genome_overview.csv
Closed 2 years ago
Oslovirus Escherichia phage TL-2011c is temperate phage
Closed 2 years ago2
Host taxonomy
Closed 3 years ago4
Option to include all viruses (not just phages)
Closed 3 years ago
Weird character ^@ in genomes.fa file
Closed 3 years ago1
Phage lifestyle
Closed 3 years ago2
Full virus taxonomy
Closed 3 years ago1
Minor errors inphared.pl
Closed 3 years ago1