Sukriti Paul's repositories
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
DTINet
A Network Integration Approach for Drug-Target Interaction Prediction
atac-seq-pipeline
ENCODE ATAC-seq pipeline
pyBigWig
A python extension for quick access to bigWig and bigBed files
chemicalx
A PyTorch and TorchDrug based deep learning library for drug pair scoring.
toolset
MMTSB Tool Set
TTClust
clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
Exomiser
A Tool to Annotate and Prioritize Exome Variants
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
PrimateAI
deep residual neural network for classifying the pathogenicity of missense mutations.
DeepFRI
Deep functional residue identification
pymol-open-source
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
alphafold
Open source code for AlphaFold.
ColabFold
Making Protein folding accessible to all via Google Colab!
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
DeepLoc
Predicting protein subcellular localization using deep learning
DeepLocUpdated
Updated DeepLoc Repository (source: https://github.com/ThanhTunggggg/DeepLoc).
fold2seq
Code for Fold2Seq paper from ICML 2021
DeepFun
DeepFun model
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
cath-tools
Protein structure comparison tools such as SSAP and SNAP
nORF-data-prep
Processing openProt and sorfs.org databases into lab usable formats
EVE
ENSEMBL VEP on EC2
gc
Granular clustering of de novo protein models