sukritipaul05

folding_tools

A collection of *fold* tools

DeepPurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

aws-batch-arch-for-protein-folding

encode-data-usage-examples

atac-seq-pipeline

ENCODE ATAC-seq pipeline

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

aws-batch-arch-for-protein-folding

aws-batch-architecture-for-alphafold

PrimateAI

deep residual neural network for classifying the pathogenicity of missense mutations.

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

MULocDeep

amazon-genomics-cli

chemicalx

A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)

equidock_public

EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

toolset

MMTSB Tool Set

DeepFRI

Deep functional residue identification

MeShClust

MeShClust: an intelligent tool for clustering DNA sequences

cath-tools

Protein structure comparison tools such as SSAP and SNAP

VEP_plugins

Plugins for the Ensembl Variant Effect Predictor (VEP)

EVE

ENSEMBL VEP on EC2

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

ColabFold

Making Protein folding accessible to all!

subcellular_localization

alphafold

Open source code for AlphaFold.

fold2seq

Code for Fold2Seq paper from ICML 2021

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

MiniFold

MiniFold: Deep Learning for Protein Structure Prediction inspired by DeepMind AlphaFold algorithm