sukritipaul05

aws-batch-arch-for-protein-folding

alphafold

Open source code for AlphaFold.

atac-seq-pipeline

ENCODE ATAC-seq pipeline

aws-batch-architecture-for-alphafold

cath-tools

Protein structure comparison tools such as SSAP and SNAP

chemicalx

A PyTorch and TorchDrug based deep learning library for drug pair scoring.

ColabFold

Making Protein folding accessible to all via Google Colab!

DeepFRI

Deep functional residue identification

DeepFun

DeepFun model

DeepLoc

Predicting protein subcellular localization using deep learning

DeepLocUpdated

Updated DeepLoc Repository (source: https://github.com/ThanhTunggggg/DeepLoc).

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

DTINet

A Network Integration Approach for Drug-Target Interaction Prediction

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

equidock_public

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

EVE

ENSEMBL VEP on EC2

Exomiser

A Tool to Annotate and Prioritize Exome Variants

fold2seq

Code for Fold2Seq paper from ICML 2021

gc

Granular clustering of de novo protein models

MULocDeep

nORF-data-prep

Processing openProt and sorfs.org databases into lab usable formats

PrimateAI

deep residual neural network for classifying the pathogenicity of missense mutations.

pyBigWig

A python extension for quick access to bigWig and bigBed files

pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

subcellular_localization

toolset

MMTSB Tool Set

TTClust

clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)

VEP_plugins

Plugins for the Ensembl Variant Effect Predictor (VEP)