Sukriti Paul's repositories
alphafold
Open source code for AlphaFold.
atac-seq-pipeline
ENCODE ATAC-seq pipeline
cath-tools
Protein structure comparison tools such as SSAP and SNAP
chemicalx
A PyTorch and TorchDrug based deep learning library for drug pair scoring.
ColabFold
Making Protein folding accessible to all via Google Colab!
DeepFRI
Deep functional residue identification
DeepFun
DeepFun model
DeepLoc
Predicting protein subcellular localization using deep learning
DeepLocUpdated
Updated DeepLoc Repository (source: https://github.com/ThanhTunggggg/DeepLoc).
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
DTINet
A Network Integration Approach for Drug-Target Interaction Prediction
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
EVE
ENSEMBL VEP on EC2
Exomiser
A Tool to Annotate and Prioritize Exome Variants
fold2seq
Code for Fold2Seq paper from ICML 2021
gc
Granular clustering of de novo protein models
nORF-data-prep
Processing openProt and sorfs.org databases into lab usable formats
PrimateAI
deep residual neural network for classifying the pathogenicity of missense mutations.
pyBigWig
A python extension for quick access to bigWig and bigBed files
pymol-open-source
Open-source foundation of the user-sponsored PyMOL molecular visualization system.
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
toolset
MMTSB Tool Set
TTClust
clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)