Simon Heumos's repositories
pangenome-paper
Cluster efficient pangenome graph construction with nf-core/pangenome
bioconda-recipes
Conda recipes for the bioconda channel.
libbf
:dart: Bloom filters for C++11
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
pipeline-docs
Docs for QBiC pipelines
QMSFC
Data and code for the `Multiomics surface receptor profiling of the NCI-60 tumor cell panel uncovers novel theranostics for cancer immunotherapy` paper.
sequenceTubeMap
displays multiple genomic sequences in the form of a tube map
seqwish
alignment to variation graph inducer
sgd2
header-only large graph layout via stochastic gradient descent
SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
smoothxg
linearize and simplify variation graphs using blocked partial order alignment
test-datasets
Test data to be used for automated testing with the nf-core pipelines
wfmash
base-accurate DNA sequence alignments using WFA and mashmap2