subwaystation

strangepg

strange pangenome and huge graph visualization

minigraph-cactus-nf

a nextflow pipeline for creating a pangenome with minigraph-cactus

pafview

HySortK

High Performance Sorting Based Distributed memory K-mer counter

MemPanG24

Computational Pangenomics in Memphis

zenodo-upload

upload big files to Zenodo using cURL, jq and bash

nf-boost

Experimental features for Nextflow

hprc-tutorials

nf-co2footprint

[WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.

workshop-hprc-hugo24

yllm

Yet another LLM command line interface

gfalace

lace up GFA files using panSN path name sub-ranges to coordinate the lacing

povu

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

pcgr

Personal Cancer Genome Reporter (PCGR)

fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

pangenome

Renders a collection of sequences into a pangenome graph.

pertpy

Perturbation Analysis in the scverse ecosystem.

pantera

Identification of transposable element families from pangenome polymorphisms

lamindb-docker

Sample docker stacks for LaminDB.

multiplesequencealign

A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.

agc

Assembled Genomes Compressor

PanSN-spec

Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes

astar-pairwise-aligner

A pairwise sequence aligner written in Rust

fair-data-provider

A humble effort to expose datasets in a FAIR way using Schema.org and Bioschemas.org

gfagino

your friendly pangenome graph genotyper

sorting-paper

Path-Guided Stochastic Gradient Descent layout of pangenome graphs

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

keane_mouse_pangenome

pollen

generating hardware accelerators for pangenomic graph queries