Giters
Graph Genome Browser Consortium (graph-genome)

Graph Genome Browser Consortium

graph-genome

Geek Repo

Group developing a browser to scale to 1,000 genomes and zoom to chromosome scale.

Home Page:Graphgenome.org

Github PK Tool:Github PK Tool

Graph Genome Browser Consortium's repositories

Schematize

Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.

Language:JavaScriptLicense:Apache-2.0Stargazers:10Issues:12Issues:62

graph_summarization

Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:7Issues:6Issues:16

MatrixTubeMap

Using a Matrix to show coverage of multiple genomic sequences using a prototype hack of Sequence Tubemap

Language:JavaScriptLicense:MITStargazers:7Issues:3Issues:15

graph-genome.github.io

Graph Genome Documentation

Language:HTMLStargazers:5Issues:7Issues:15

pipeline

odgi - component_segmentation - Schematize

Language:ShellStargazers:4Issues:3Issues:12

component_segmentation

Read in ODGI Bin output and identify co-linear components

Language:PythonLicense:Apache-2.0Stargazers:3Issues:10Issues:32

graph-genomics-review

review article on graph genomics

Language:TeXStargazers:2Issues:1Issues:0

jbrowse-components

Reusable graphical components for genomic data

Language:JavaScriptStargazers:2Issues:1Issues:1

bh19_frontend

This repository serves as a temporary storage for the frontend part developed at the BioHackathon 2019. The starting point is taken from https://github.com/subwaystation/sequenceTubeMap/tree/split.

Language:JavaScriptLicense:MITStargazers:1Issues:4Issues:0

jbrowsing_graphs

JBrowse1 utiltized on Graph Genomes

License:Apache-2.0Stargazers:0Issues:2Issues:0

spodgi

RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)

Language:PythonLicense:MITStargazers:0Issues:1Issues:0

MoMI-G

Schematize is a Genome Browser for Graph Genomes. It is designed to scale to thousands of individuals and gigabase of sequence. Schematize is a fork of MoMI-G by Toshiyuki Yokoyama.

Language:TypeScriptLicense:MITStargazers:0Issues:1Issues:0

SPARQL_PLAYGROUND

This repository should host preconstructed SPARQL endpoints serving graphs of the variation graph toolkit via virtuoso backend.

License:Apache-2.0Stargazers:0Issues:3Issues:1

tubeify

This repository serves as a temporary storage for the backend part developed at the BioHackathon 2019.

Language:TypeScriptStargazers:0Issues:3Issues:4