QBiC Pipelines
This repository contains the documentation necessary to run different types of analysis in our clusters at QBIC.
Contributing to the documentation
To contribute to the documentation, please fork your repository and make a pull request. After review, your changes will be introduced to the documentation.
Checking the documentation locally
To check locally how the documentation is building, you need to install the sphinx
, recommonmark
, sphinx-rtd-theme
and httpserver
dependencies. It requires Python 3!
pip install sphinx recommonmark httpserver sphinx-rtd-theme
Then clone this repository from GitHub:
git clone git@github.com:qbic-pipelines/pipeline-docs.git
Go to the /docs
directory of this repository and run:
make html
All the html files will be build under the _build
directory. Then you can view the documentation in your browser by using the python built-in server:
python -m http.server
Go to the address shown in your browser, navigate to the _build
directory and you can check out locally the documentation.
Deploying the documentation to readthedocs
This documentation is now hosted on readthedocs at: https://pipeline-docs.readthedocs.io. The documentation deployment is automated by changes to the GitHub repository.