stevenweaver

dotfiles

rc

hyphy

HyPhy: Hypothesis testing using Phylogenies

autotune-app

bioconda-recipes

Conda recipes for the bioconda channel.

BioExt

A few handy bioinformatics tools not already within BioPython

cveSite

datamonkey-js

Datamonkey - Run state-of-the-art statistical models through the comfort of your browser

datamonkey-js-server

dwh

edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

fda_ngsqc_runs

hivtrace

hivtrace-viz

hyphy-analyses

HyPhy standalone analyses

hyphy-site

HyPhy Markdown Site

hyphy-vision

Visualize HyPhy results in your browser

likely-neutral-with-steven-weaver

MutTui

MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets

phylotree.js

Interactive viewer of phylogenetic trees

SARS-CoV-2

Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures

SARS-CoV-2-variation

SARS-CoV-3

Daily analyses of genomic SARS-CoV-2 data

seqcomplexity

Rust package that calculates sequence complexity from FastQ file

seqdupes

Filter out sequence duplicates from FASTA/FASTQ file.

seqsample

Randomly sample sequences from a FASTA/FASTQ file

seqsplitter

Get a subset a sequences from a large FASTA file.

stevenweaver

tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

usegalaxy-tools

usegalaxy.* common tools

will-rowe