Parses fasta records based on list of either header names or regexes
Installation
Source
Download the source code and run
cargo install
Usage
seqsplitter -f path/to/sequence.fastq -l path/to/list.txt
Arguments:
| Parameter | Default | Description |
|---|---|---|
| -f --fasta | - | The path to the FASTQ file to use |
| -l --list | - | List of ids to parse out |
| -r --regex | false | Interpret list as regex |
| -u --assume_unique | false | Assume list is unique and exit when all seqs in list are found |
| -v --version | - | Print version information |