Sergey Venev's repositories
cooltools
The tools for your .cool's
personal-ansible-config
Personal ansible config for setting up workstations/laptops
DNAscent
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
CV
just a CV
oe-tileset-example
a small example of on-the-fly observed/expected in HiGlass
bioframe
Pandas utilities for tab-delimited and other genomic data files
puzzle_js_kolya
play around with web (JS/html/css) to make a stupid arithmetic puzzle generator
clodius
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
cLIMS-docker
cLIMS repository running on Docker Contaienrs
higlass
Fast large scale matrix visualization for the web.
cworld-dekker
perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
negspy
Python NGS Repository
docker-pure-ftpd
Docker Pure-ftpd Server
test-chunk-hdf5
test different scenarios on writing/reading a big hdf5 using pandas
random-nextflow-utils
just trying to apply nextflow to some low-level data-management
randomnotes
just some random notes
micro-image-test
play with image convolution
octopass
🐙 Management linux user and authentication with team or collaborator on Github.
cooloop
experimental/development version of the dot-finder
model_play
playing with modeling
sergpolly.github.io
personal page / blog / lab journal
GlycoMadness
assorted scripts and data for Gilmore's lab glyco-project
cooler_dig_not_bug
digging into cooler
galeprot
GPU accelerated lattice protein folding
npcuda-example
Example python (numpy) -- CUDA installable package with a C-extension library
Thermal_adapt_scripts
Scripts to pull and analyze thermal adaptation data for prokaryotes.
EMPIRIC-HA
Scripts for analysis of EMPIRIC experiment on the HA signal peptide.