sergpolly

peaktools

tools for BEDPE-style peaks

Thermal_adapt_scripts

Scripts to pull and analyze thermal adaptation data for prokaryotes.

GlycoMadness

assorted scripts and data for Gilmore's lab glyco-project

bioframe

Pandas utilities for tab-delimited and other genomic data files

cLIMS-docker

cLIMS repository running on Docker Contaienrs

clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

cooler_dig_not_bug

digging into cooler

cooloop

experimental/development version of the dot-finder

cooltools

The tools for your .cool's

ct_figures

CV

just a CV

cworld-dekker

perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)

DNAscent

Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.

docker-pure-ftpd

Docker Pure-ftpd Server

EMPIRIC-HA

Scripts for analysis of EMPIRIC experiment on the HA signal peptide.

galeprot

GPU accelerated lattice protein folding

higlass

Fast large scale matrix visualization for the web.

micro-image-test

play with image convolution

model_play

playing with modeling

negspy

Python NGS Repository

npcuda-example

Example python (numpy) -- CUDA installable package with a C-extension library

octopass

🐙 Management linux user and authentication with team or collaborator on Github.

oe-tileset-example

a small example of on-the-fly observed/expected in HiGlass

personal-ansible-config

Personal ansible config for setting up workstations/laptops

puzzle_js_kolya

play around with web (JS/html/css) to make a stupid arithmetic puzzle generator

random-nextflow-utils

just trying to apply nextflow to some low-level data-management

randomnotes

just some random notes

sergpolly.github.io

personal page / blog / lab journal

sergpolly_cv

cv

test-chunk-hdf5

test different scenarios on writing/reading a big hdf5 using pandas