semenko

InvokeAI

InvokeAI is a leading creative engine for Stable Diffusion models, empowering professionals, artists, and enthusiasts to generate and create visual media using the latest AI-driven technologies. The solution offers an industry leading WebUI, supports terminal use through a CLI, and serves as the foundation for multiple commercial products.

howdoi

instant coding answers via the command line

pics

File formats dissections and more...

security-research

This project hosts security advisories and their accompanying proof-of-concepts related to research conducted at Google which impact non-Google owned code.

learn-fpga

Learning FPGA, yosys, nextpnr, and RISC-V

pyinfra

pyinfra automates infrastructure super fast at massive scale. It can be used for ad-hoc command execution, service deployment, configuration management and more.

prettymapp

🖼️ Create beautiful maps from OpenStreetMap data in a streamlit webapp

stable-diffusion

Windows11Upgrade

Windows 11 Upgrade tool that bypasses Microsoft´s requirements

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

goleft

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

udf_infusion

A MySQL functionality enhancement UDF

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

spectra

Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms

TabTransformerTF

TensorFlow implementation of TabTransformer

SCPA

R package for pathway analysis in scRNA-seq data

Trex

Using TCR and expression for sequence embedding

tabnet_fork

A fork of TabNet by Google Research

umap

RLM

Read level DNA methylation analysis of bisulfite converted sequencing data

DeepCCI

biscuit

BISulfite-seq CUI Toolkit

methtuple

methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing data, such as methylC-seq.

DAMEfinder

Finds DAMEs - Differential Allelicly MEthylated regions

neural_network_from_scratch

A Jupyter notebook building and training a Neural Network from scratch with NumPy

RNAsum

Pipeline for generating RNAseq-based cancer patient reports

sts-risk-calculator-cli

A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.

mark-nonconverted-reads

This program examines a BAM or SAM stream for reads that contain multiple Cs in non-CpG context. It markes these reads with a tag (XX:Z:UC) and sets the vendor failed bit to prevent these reads from being used in downstream methylation calling. It also prints summary information to stderr.