theislab / ehrapy

Electronic Health Record Analysis with Python.

ehrapy overview

Features

• Exploratory and targeted analysis of Electronic Health Records
• Quality control & preprocessing
• Visualization & Exploration
• Clustering & trajectory inference

Installation

You can install ehrapy via [pip] from [PyPI]:

$ pip install ehrapy

Usage

Please have a look at the Usage documentation and the tutorials.

import ehrapy as ep

Citation

Heumos, L., Ehmele, P., Treis, T. et al. An open-source framework for end-to-end analysis of electronic health record data. Nat Med (2024). https://doi.org/10.1038/s41591-024-03214-0.