mortazavilab / PyWGCNA

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad415/7218311

mortazavilab/PyWGCNA Issues

Seeking help on `order` Parameter Usage and Metadata Color Settings
Updated 5 months ago2
What other methods to define metadata colors are allowed, besides color labels ('black', 'pink', etc)?
Closed 5 months ago1
error experienced in tutorial
Closed 5 months ago6
Doubt on application
Closed 6 months ago1
Genes and samples switched in goodSamplesGenes
Closed 6 months ago3
How adjust parameter in functions??
Closed 6 months ago
getDatTraits method might not be suitable for continuous traits.
Closed 7 months ago1
Image too large. How suppress drawing when using pyWGCNA_obj.preprocess() ?
Closed 7 months ago3
RecursionError when run pyWGCNA_ct.preprocess()
Closed 7 months ago1
ask for some questions
Closed 7 months ago3
Correlation matrix
Closed 7 months ago6
Unable to run the package due to pandas issue. I am attaching the screenshot for the error generated.
Closed 8 months ago6
Gene Significance
Closed 8 months ago1
Different results generated by v1.15 and v1.20
Closed 8 months ago1
varianceStabilizingTransformation and input data
Closed 8 months ago3
Dependencies requiring updates (pandas and pyvis)
Closed 8 months ago3
WGCNA and GeneExp class documentation does not match parameter names
Closed 8 months ago1
Error installing on python 3.11 on Windows and running moduleEigengenes
Closed 8 months ago3
WGCNA.CoexpressionModulePlot error regarding NDFrame.where
Closed 8 months ago1
More flexibility for functional enrichment analysis
Closed 8 months ago1
AttributeError: 'WGCNA' object has no attribute 'expressionList'
Closed 8 months ago1
calculate Gene Significance
Updated 9 months ago6
module-traitRelationships negative correlation p values incorrect
Closed 9 months ago3
ValueError: 'box_aspect' and 'fig_aspect' must be positive
Closed 9 months ago10
functional_enrichment_analysis ()
Closed 9 months ago2
No enrich terms when cutoff = 1 in module black
Closed 10 months ago1
How to add color for metadata consisting of continuous variables and plot the module-trait relationship?
Closed 10 months ago1
Error in .analyseWGCNA() resulting from matplotlib .shrunk_to_aspect()
Closed 10 months ago1
How to change parameter in findModules()???
Closed 10 months ago1
missing data 3xTgAD_paper
Closed a year ago4
Issue with analyseWGCNA
Closed a year ago2
What does this error mean when i run '.findModules()' ?
Closed a year ago3
local variable 'merge' referenced before assignment
Closed a year ago7
AttributeError: 'NoneType' object has no attribute 'render'
Closed a year ago6
pyWGCNA_obj.analyseWGCNA() :ValueError: 'c' argument must be a color, a sequence of colors, or a sequence of numbers, not array
Closed a year ago2
Multiple errors running under DOMINO
Closed a year ago7
UnboundLocalError: cannot access local variable 'merge' where it is not associated with a value
Closed a year ago4
hub genes will be used instead of principal components error?
Closed a year ago5
"unsigned" option not working
Closed a year ago1
Error appearance in PyWGCNA (version 1.2.4) in Google colaboratory
Updated a year ago4
how to make age a continuous parameter?
Closed a year ago4
Error in findModules()
Closed a year ago3
index out of bounds error
Closed a year ago2
server error in getting gene list
Closed a year ago4
Error with findModules()
Closed a year ago7
Error with function analyseWGCNA()
Updated a year ago3
'WGCNA' object has no attribute 'top_n_hub_genes'
Closed a year ago2
pyWGCNA.findModules()—— sys.exit("Error!")
Closed a year ago2
single cell data?
Closed a year ago2
When TOMtype is set to unsigned, an unexpected error will be triggered.
Closed a year ago1