rchikhi

atuin

✨ Magical shell history

LibreChat

Enhanced ChatGPT Clone: Features Anthropic, AWS, OpenAI, Assistants API, Azure, Groq, o1, GPT-4o, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message search, langchain, DALL-E-3, ChatGPT Plugins, OpenAI Functions, Secure Multi-User System, Presets, completely open-source for self-hosting. Actively in public development.

shell_gpt

A command-line productivity tool powered by AI large language models like GPT-4, will help you accomplish your tasks faster and more efficiently.

slackdump

Save or export your private and public Slack messages, threads, files, and users locally without admin privileges.

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

rapidgzip

Gzip Decompression and Random Access for Modern Multi-Core Machines

pangene

Constructing a pangenome gene graph

dipcall

Reference-based variant calling pipeline for a pair of phased haplotype assemblies

metaMDBG

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

cuttlefish

Building the compacted de Bruijn graph efficiently from references or reads.

usearch12

Open-source usearch

SPLASH

shellChatGPT

Shell wrapper for OpenAI's ChatGPT, DALL-E, Whisper, and TTS. Features LocalAI, Ollama, Gemini, Mistral, Groq, and Anthropic integration.

MBG

fastq-rs

PTRHash

PTRHash minimal perfect hash function, based of PTHash

nail

Nail is an Alignment Inference tooL

aws-s3-bucket-purger

A program that will purge any AWS S3 Bucket of objects and versions quickly

compact_vector

Bit packed vector of integral values

palmscan

ntEmbd

Deep learning embedding for nucleotide sequences

ONEcode

1-code framework: docs, C-library, and tools

CaPS-SA

Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays

rhea

Recognizing HGT Events in Assemblies

f2sz

re_coding_style

Robert C. Edgar's C++ coding style

biolib

Library containing useful building blocks for bioinformatics software

pansel

muset

MUSET. Set of utilities for the construction of abundance unitig matrices from sequencing data