Rayan Chikhi's repositories
GPT-is-you
Personalized language model from Whatsapp chat history
rust-alignbench
Pairwise nucleotide alignment benchmark of Rust bindings
rust-seq2kminmers
Iterate k-min-mers from a DNA sequence in Rust
rust-parallelfastx
Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does
rust-superkmers
Construction of superkmers from a DNA sequence in rust
Scrooge-sys
Rust bindings for the CPU Scrooge sequence alignment library
2022-pangenome-aws
2022 WABI Pangenome workshop hackathon (AWS intro)
ntHash-AVX512
Various test improvements upon mirounga's AVX2 and AVX512 ports of ntHash2 in 2018
rust-kminmer2DHisto
Create a KAT-like 2D histogram with k-min-mers counting
aws-batch-runtime-monitoring
Serverless application to monitor an AWS Batch architecture through dashboards. CloudTrail creation fork
bioconda-recipes
Conda recipes for the bioconda channel.
cuttlefish
Cuttlefish2 except that it also output approximate mean k+1-mer counts on the unitigs, and many other specific optimisations for my use case
GeneMark-ETP
GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
kff-cpp-api
A C++ API to read and write kff files
kmer_file_format
Contains the description of a file format to store kmers and associated values
ONEcode
1-code framework: docs, C-library, and tools
open-data-registry
A registry of publicly available datasets on AWS
rust-nthash32
ntHash implementation in Rust (Fork of Luiz's repo, using 32 bits hashes instead of 64)