chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

chhylp123/hifiasm Issues

v0.15.3 hom-peak and het-peak error
Updated 19 days ago
assembly genome is bigger than survey, error log
Updated 23 days ago
What is the strategy for Ultra-long ONT integration?
Updated 23 days ago4
Spend too long times to run hifiasm
Updated 23 days ago5
output of partial phasing - some unitig can be missing in one haploid?
Updated 25 days ago
The genome size of p_ctg.fa is smaller than survey
Updated 25 days ago
Hifiasm Assembly Purging
Updated 25 days ago1
missing 8Mb sequences in the assembly
Updated 25 days ago6
"c" suffix on contigs
Updated a month ago
How to classify hifi reads into haplotype genomes? minimap2 did not work well
Updated a month ago2
Whether unitig will be filtered based on the hic signal of unitig
Updated a month ago2
Numerous spurious contig overlaps in assemblies
Updated a month ago1
High Duplication in my Assembly...l3 (purge-dup) doesn't help much
Updated a month ago1
Recreate p_ctg from p_utg
Updated a month ago3
False inserts over duplicated regions (TRBV12-3/4)
Closed a month ago2
Homotetraploid, super-large genome, with different parameters, the size of p_utg varies greatly？
Updated a month ago2
Output that maps repeat shrapnels to unitigs and to scaffolded chromsomes
Updated a month ago
output GFA with J lines in scaffolding mode
Updated a month ago
Issues with Hexaploid Assembly
Updated 2 months ago
No further progress after generating *bin files
Updated 2 months ago1
fungi diploid assemble phasing errors
Updated 2 months ago
In the diploid assembly, hfiiasm identified a value that did not exist in the k-mer plot as the "homozygous read coverage threshold".
Updated 2 months ago
Read error correction does not reduce the number of kmers present once, twice or three times
Updated 2 months ago
Interchromosomal misjoin
Updated 2 months ago1
Ultra Long intergration failed: no output for UL kmer counting
Closed 2 months ago3
Resolving switching error (?)
Updated 2 months ago
Basic Question About HiFi Input
Updated 2 months ago3
Switch error on X and Y chromosome
Updated 2 months ago2
line 8: 110334 Aborted(core dumped)
Updated 2 months ago1
Empty haplotype 2 gfa files by ONT integration
Updated 2 months ago1
*.ovlp.bin file
Updated 2 months ago1
No haploid.gfa files output in trio-binning mode
Updated 3 months ago3
discontinuous assembly with shorter pacbio hifi reads but high coverage
Updated 3 months ago2
Is x20 of Hifi data enough to construct draft assembly of 6.5Gb genome?
Updated 3 months ago1
how to make the correct genome size estimation for allotetraploid species?
Updated 3 months ago2
In Trio-binning, always more on hap1 despite (almost) same sequences for paternal and maternal
Updated 3 months ago
Hifi + Hi-c + ONT assembly fails
Updated 3 months ago
Possible missing one haplotype in human assemblies
Updated 3 months ago2
setting K parameter in yak
Closed 4 months ago2
Mitigate Overlapping Sequence Assignments in Haplotypes
Updated 4 months ago3
low BUSCO scores
Updated 4 months ago1
Help!!! Segmentation fault (core dumped)
Updated 4 months ago1
Question about the depth of ONT ultra-long reads
Updated 4 months ago1
Add Options for Pore-C Data
Closed 4 months ago1
overlap parameter
Updated 4 months ago2
Output interpretation with HiFi+ONT+HiC with inbred samples + `-l0`
Updated 4 months ago1
Why more contigs always present in haplotype 1 than haplotype 2?
Closed 4 months ago2
larger assembly size than kmer estimation genome size
Closed 4 months ago1
How do you assemble chromosomes X and Y?
Updated 4 months ago3
larger assembly size than kmer estimation genome size
Updated 4 months ago2