rafe's repositories
digi_leap_old
Extract information from images of herbarium specimens
FloraTraiter
Parsers (rule-based) for information extraction of traits from plant treatments
herbarium_phenology
Extract phenological data from digitized herbarium specimens
ocr_ensemble
OCR herbarium labels with an ensemble of image processing and OCR engines
label_finder
Use a neural network to find labels on images of herbarium sheets
pdf_parsers
Utilities for parsing PDFs for information extraction
LabelTraiter
Extract traits from OCRed text of herbarium labels
reconcile_traits
Reconcile traits from LabelTraiter and ChatGPT4
segment_seeds
Instance segmentation of seeds on images
spell-well
A simple delete only spell checker
common_utils
Utilities used in several repositories
dot_configs
Transfer my configs
ectoparasites
Utilites and database supporting ectoparasite research
label_reconciliations
Code for reconciling multiple transcriptions for a label
line-align
Multiple sequence alignment on lines of text
mosquito
Support for research on mosquitos
PowerRANGES
Rule-based trait parsers supporting the RANGES project
qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
traiter_efloras
Extract information in plant "treatments" from eFloras
traiter_llm
Get traits from a large language model
traiter_mimosa
Extract traits about mimosas from authoritative literature
traiter_odonata
Extract trait information from field guides of dragonflies
traiter_plants
Holds patterns common to all Traiter projects for plants