Niranj Chandrasekaran's repositories
abstract_aai
Computes the number of abstracts submitted to the AAI annual meeting
check-recipe-output
Check if all files were created
check-target-2-compounds
Check Target-2 compounds across sources
compare_ap
Compare AP values calculated by the different scripts
cytominer-eval
Common Evaluation Metrics for DataFrames
datasets
Images and other data from the JUMP Cell Painting Consortium
ISLP_labs
Up-to-date version of labs for ISLP
JUMP-Target
Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
lincs-cell-painting
Processed Cell Painting Data for the LINCS Drug Repurposing Project
mbp_calculation
Calculates Middle Base Pair Frequency
piximi
a free, open-source web app for annotating, training, and evaluating image understanding algorithms
profiling-recipe
Image-based Profiling Recipe
jump-profiling-recipe
Workflow for processing cpg0016-jump profiles
pycytominer
cytominer python package
python-fire
Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.
scorecard
Generate Cricinfo like scorecard for IPL games from cricsheet yaml files
toggl-cli
A simple command-line interface for toggl.com
tutorials
CellProfiler tutorial pipelines and images