ncbi / egapx

Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation

ncbi/egapx Issues

Question: partial annotation
Closed 3 months ago2
local genome, RNAseq and protein files
Closed 3 months ago4
run_rnaseq_collapse exit status 3
Closed 3 months ago6
Relocate requirements.txt
Updated 3 months ago3
offline mode?
Closed 3 months ago8
Error executing process
Closed 3 months ago15
Error using input_D_farinae_small_rnaseq.yaml (v0.2-alpha)
Closed 3 months ago1
Incomplete run marked as completed
Closed 3 months ago6
Output GFF3 misses attributes
Closed 4 months ago2
New update fails example data ?
Closed 4 months ago5
SRR fails to be read (singularity)
Closed 4 months ago2
Singularity (root filesystem extraction failed) Associated Error
Closed 6 months ago5
Run error (singularity)
Closed 5 months ago9
reads_ids and reads_query won't work for me
Closed 5 months ago5
Error in test run ( nextflow )
Closed 5 months ago4
Method for using PacBio Iso-Seq reads?
Closed 5 months ago5
RNA-seq & Array issue
Closed 6 months ago15
Error with convert proteins step
Closed 6 months ago22
Clarity on minimum memory requirement for run
Closed 6 months ago3
Error message in test run (-e docker)
Closed 6 months ago5
Use of egapx with IsoSeq data
Closed 7 months ago1
test issue
Closed 7 months ago