ncbi / ncbi-vdb

ncbi-vdb

ncbi/ncbi-vdb Issues

Some builtins that vdb uses are gcc-specific and don't compile with clang.
Closed 6 months ago1
Error encountered while compiling for Arm platform
Closed 6 months ago2
Enable Apple Silicon builds by adding `interfaces/cc/clang/aarch64`
Closed 6 months ago2
Request: i386 support
Closed 6 months ago3
HTTP 405 status on HEAD requests
Closed 8 months ago3
The gethostbyname*() and gethostbyaddr*() functions are deprecated as among other things they are not IPv6 ready
Updated 2 years ago1
Reduce maximum memory usage while reading SRA data?
Updated 2 years ago2
error: too few arguments to function ‘H5Oget_info_by_name3’
Updated 2 years ago1
Encountered problems with GCC
Closed 2 years ago1
Construction method of arm platform
Closed 2 years ago
modify the compiler
Closed 2 years ago3
When compiling SRA Tools & NCBI VDB in fedora36 environment, HDF5 static library or shared library file cannot be found
Closed 2 years ago1
bitcpy
Closed 2 years ago1
undefined reference to `__stack_chk_guard' when configuring IgBlast
Closed 2 years ago1
-bash: vdb-config: command not found
Closed 2 years ago2
Is there a way to force the release of the VDB memory cache with C++ SDK?
Closed 2 years ago2
Built target Test_KNS_proxy-with-scheme_failure
Closed 2 years ago1
Unable to stream SRR12596531 but can read from local disk
Closed 3 years ago4
Build system doesn't find cmake3 on CentOS 7
Closed 3 years ago2
Reference Workflow for Fastq->SRA File (VDB Conversion)
Updated 3 years ago2
build issues with gcc 10.3.0 on Linux/x86-64
Closed 3 years ago3
VCursorCellDataDirect returns a zero length read ... but shouldn't?
Closed 4 years ago5
Parallel use of prefetch of SRA files from AWS S3 leads to NCBI abuse message & blocking?
Closed 4 years ago42
Installs static libs instead of shared libs, for example lib/libncbi-vdb.a.2.11.0
Updated 4 years ago5
fatal error: 'ext/mbedtls/base64.h' file not found
Closed 4 years ago1
ktst test failure
Closed 4 years ago6
Memory leak in ngs::ReadCollection and/or ncbi::NGS::openReadCollection when streaming SRA records?
Closed 4 years ago3
hdf5 not recognized on Arch
Closed 4 years ago4
Benchmarking parallel SRA downloads using prefetch on AWS
Closed 4 years ago1
Can't find hdf5 after apt-get installation
Closed 4 years ago6
Install can't find libxml2
Closed 4 years ago3
Build from source errors
Closed 4 years ago1
Extreme memory consumption when reading certain SRA records?
Updated 4 years ago11
Uneven reading time within a SRA file
Updated 4 years ago1
Test for root in make install
Closed 4 years ago6
/kns/http-file.c:1275:19: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
Closed 4 years ago2
VDBManagerPathType() returns kptNotFound under stress
Updated 5 years ago
error: pshufb is not supported on generic64.aes
Updated 5 years ago9
Static declaration of gettid follows non-static declaration
Closed 5 years ago4
Error: `pshufb' is not supported on `generic64.aes'
Closed 8 years ago11
Please remove explicit -m32/-m64 switch
Closed 5 years ago7
installation does not include files required by sra-tools
Closed 5 years ago2
make -j4 fails
Closed 7 years ago2
`with-vdb explicitly specified, but not supported on this platform` error
Closed 7 years ago1
Any documentation?
Closed 7 years ago1
Change to 2.8.1 release tag / checksum error?
Closed 8 years ago2
Installed ncbi-vdb package cannot be found by sratools
Closed 8 years ago6
make install error: KFG lib not compiling
Closed 8 years ago4
libs/search requires -msse2 switch
Updated 8 years ago
"prefetch -t http ..." produces empty files
Closed 9 years ago5