natverse / nat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

https://natverse.org/nat/

natverse/nat Issues

Compatibility with igraph 2.0.0
Updated 6 months ago20
plotly wire3d() no longer working after upgrading from nat 1.8.22 to 1.10.4
Closed a year ago2
nat::wire3d is plotting polygons when there should only be triangles - not a problem with rgl::wire3d
Updated a year ago
Can't recreate the example on the reference site of nat: NeuroAnatomy Toolbox for wire frame plots
Closed a year ago3
bug in get_distance_to_soma
Updated a year ago
fix bug in matching by first column
Closed 2 years ago
consider adding a `nid()` function to handle numeric ids
Updated 2 years ago
nlapply to include metadata from data.frame
Updated 2 years ago
Need to integrate as.seglist test fix in CRAN release
Closed 2 years ago6
Future igraph will consider the null graph disconnected
Closed 2 years ago1
Undesired output when stitching with an empty neuronlist
Closed 2 years ago1
Support for units in nat
Updated 2 years ago1
subset neuronlist doesn't work with functions
Closed 2 years ago3
improve performance of simplify_neuron
Closed 3 years ago4
write neurons save metadata by default
Updated 3 years ago1
Add windows build to github actions
Updated 3 years ago2
Allow xyzmatrix method to assign by rownames
Updated 3 years ago1
add print method for neuronlistz
Closed 3 years ago
Strahler order fails on a simplified neuron with no branches
Closed 3 years ago3
nTrees in summary
Closed 3 years ago1
bug in multiplication for neuronlistz
Closed 3 years ago1
Consider adding geodesic_distances function
Updated 3 years ago1
pointsinside for bounding box should not require Rvcg
Closed 3 years ago
Implement support for neuroglancer visualisation
Updated 4 years ago3
"pan3d()" not found
Closed 4 years ago4
Improve printing for multiclass neuronlist
Updated 4 years ago
Bad triangle numbers
Closed 4 years ago3
Fix test failure in R 4.1 for c.neuronlist
Closed 4 years ago
support for zip files specified by an URL that does not end in .zip
Updated 4 years ago1
Better support for reading / plotting neuron meshes
Closed 4 years ago2
Turn off grid lines when using plotly engine
Closed 4 years ago2
Make neuronlistfh/remotesync downloads more robust
Updated 4 years ago
Give xform.neuronlist the option to xform all points in one go
Updated 4 years ago
optimise stitching neurons function
Updated 4 years ago
Bug in xyzmatrix for 0 row data.frames
Closed 4 years ago
improve error message for cmtk.version
Closed 4 years ago1
Move features to nat from other packages
Closed 4 years ago3
Support binary HyperSurface files in read.hxsurf
Updated 4 years ago
Remove duplicate overlap / overlap_score functions
Closed 4 years ago2
as.seglist.igraph is slow
Closed 4 years ago
subset.neuron() doesn't work inside nmapply()
Closed 5 years ago4
Implement 3d- wireframe plot in plotly
Closed 5 years ago
teach dotprops.character to handle multiple input files
Closed 5 years ago
Setting fig size missing in vignette plotly.Rmd
Closed 5 years ago
xyzmatrix.mesh3d should have colnames XYZ
Closed 5 years ago
add xyzmatrix.shapelist3d method
Closed 5 years ago2
Neuron: fix use of "ties" parameter in approx() call
Closed 5 years ago
scroll to zoom does not work using nopen3d()
Closed 5 years ago2
Teach write.neuron to set label column of soma when writing SWCs
Closed 5 years ago2
Bug in nmapply with progress
Closed 5 years ago1