natverse / nat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

https://natverse.org/nat/

optimise stitching neurons function

SridharJagannathan opened this issue 4 years ago · comments

Sridhar Jagannathan commented 4 years ago

Consider optimising thestitch_neurons_mst function by computing the mst only on the fragmented nodes like below:
https://github.com/connectome-neuprint/neuprint-python/blob/b4dfd061bb12bf8d4834b9db05727b44cbd29c59/neuprint/utils.py#L469