Oxford Nanopore Technologies

dorado

Oxford Nanopore's Basecaller

medaka

Sequence correction provided by ONT Research

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

remora

Methylation/modified base calling separated from basecalling.

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

pod5-file-format

Pod5: a high performance file format for nanopore reads.

pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

read_until_api

Read Until client library for Nanopore Sequencing

rerio

Research release basecalling models and configurations

pomoxis

Analysis components from Oxford Nanopore Research

jmespath-ts

Typescript translation of the jmespath.js package

minknow_api

Protobuf and gRPC specifications for the MinKNOW API

pore-c

Pore-C support

kmer_models

Predictive kmer models for development use

duplex-tools

Splitting of sequence reads by internal adapter sequence search

Pore-C-Snakemake

jmespath-plus

JMESPath with extended collection of built-in functions

epi2me-api

API for communicating with the EPI2ME Platform for nanopore data analysis. Used by EPI2ME Agent & CLI.

ts-runtime-typecheck

A collection of common types for TypeScript along with dynamic type cast methods.

cronkite

One **hell** of a reporter

homebrew-tap

Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

ont-minimap2

Cross platform builds for minimap2

data-rambler

An experimental language for a JSON query, transformation and streaming

fs-inspect

node.js library for indexing the contents of a folder

onesie

A Linux device-driver for the MinION-mk1C

tfjs

A WebGL accelerated JavaScript library for training and deploying ML models.

vbz_js

JS bindings for VBZ compression

linux-minit-nvidia

ONT modified git://nv-tegra.nvidia.com/linux-nvidia.git.

linux4.9-minit

ONT fork of Linux for NVIDIA Tegra based devices

u-boot