Oxford Nanopore Technologies

taiyaki

Training models for basecalling Oxford Nanopore reads

pipeline-structural-variation

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

flappie

Flip-flop basecaller for Oxford Nanopore reads

scrappie

Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

pychopper

A tool to identify, orient, trim and rescue full length cDNA reads

jmespath-ts

Typescript translation of the jmespath.js package

pore-c

Pore-C support

sockeye

Single Cell Transcriptomics

vbz_compression

VBZ compression plugin for nanopore signal data

Pore-C-Snakemake

pyguppyclient

Python client library for Guppy

pipeline-nanopore-denovo-isoforms

Pipeline for de novo clustering of long transcriptomic reads

sloika

Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling

fast5_research

Fast5 API provided by ONT Research

jmespath-plus

JMESPath with extended collection of built-in functions

fast5mod

Extract modifed base call information from Guppy Fast5 files.

isONclust2

A tool for de novo clustering of long transcriptomic reads

ts-runtime-typecheck

A collection of common types for TypeScript along with dynamic type cast methods.

cronkite

One **hell** of a reporter

epi2me-api

API for communicating with the EPI2ME Platform for nanopore data analysis. Used by EPI2ME Agent & CLI.

plasmid-map

Plasmid map visualisations for Metrichor reports

spliced_bam2gff

fs-inspect

node.js library for indexing the contents of a folder

tfjs

A WebGL accelerated JavaScript library for training and deploying ML models.

ts-argue

vbz-h5py-plugin

vbz_js

JS bindings for VBZ compression

onnxjs

ONNX.js: run ONNX models using JavaScript

yellowfin

Ubuntu community theme "yaru". Better than a 🌯.