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nanoporetech
/
ont_fast5_api
Oxford Nanopore Technologies fast5 API software
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149
Watchers:
18
Issues:
77
Forks:
29
nanoporetech/ont_fast5_api Issues
multi_to_single_fast5 generated only 4000 single fast5
Closed
3 years ago
Comments count
13
Unable to copy object (file read failed) on parallel FS
Updated
7 months ago
fast5_compress error:
Updated
10 months ago
similar API for pod5?
Updated
10 months ago
Comments count
2
compress_fast5 command
Updated
a year ago
Comments count
1
single_to_multi_fast5 do not collect all the single files if the input folder contains mixed types of fast5 files.
Updated
a year ago
demux_fast5: `python3.9(20125,0x7ff84e0ee640) malloc: *** error for object 0x1110417b0: pointer being freed was not allocated`
Updated
a year ago
error when converting single read to multi read
Closed
a year ago
Comments count
1
demux_fast5 demultiplexing every single read by readID instead of barcode name
Closed
a year ago
Comments count
4
fast5_subset to take list of .fast5 files
Closed
2 years ago
Comments count
1
Some problem of multi_to_single_fast5
Closed
2 years ago
Comments count
6
The labels in the "end_reason" data type get lost when using compress_fast5
Closed
3 years ago
Comments count
7
WARNING:Fast5Filter:xxx reads not found!
Updated
2 years ago
Comments count
8
the function get_latest_analysis fails after upgrading MinKNOW to version 21 and onward
Closed
3 years ago
Comments count
6
compress_fast5 not compressing?
Closed
3 years ago
Comments count
2
Decompression
Closed
4 years ago
Comments count
10
subset obtained with fast5_subset does not work for guppy
Closed
3 years ago
Comments count
3
'demux_fast5' (and 'fast5_subset') for single read fast5s
Closed
3 years ago
Comments count
5
demultiplexing generates additional - folder
Closed
3 years ago
Comments count
3
multi_to_single_fast5 problem
Closed
3 years ago
Comments count
3
demux_fast5 resume list
Updated
3 years ago
Comments count
1
multi_to_multi_fast5
Updated
3 years ago
Comments count
2
vbz compression compatibility with guppy_basecaller
Closed
3 years ago
Comments count
2
Multi to single fast5 goes into sleep
Closed
3 years ago
Comments count
7
fast5_subset OSError
Closed
3 years ago
Comments count
4
Issues attempting to duplicate reads
Closed
3 years ago
Comments count
8
ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Unable to open file
Closed
3 years ago
Comments count
1
Question: subset by barcode
Closed
3 years ago
Comments count
10
--filename_base behaves differently in 'fast5_subset'
Updated
3 years ago
Comments count
2
Error when running compress_fast5 but seems to complete
Closed
3 years ago
Comments count
3
--sanitize can't be used with --in_place with compress_fast5
Closed
3 years ago
Comments count
2
filesize increased reconverting vbz compressed fast5 back to gzip compression
Closed
3 years ago
Comments count
13
fast5_subset failing mid-run
Closed
4 years ago
Comments count
6
Guppy default modified base calling configuration file doesn't exist
Closed
4 years ago
Comments count
1
mounting error
Closed
4 years ago
Comments count
2
fast5_subset is missing?
Closed
4 years ago
Comments count
1
Metadata from multifast5
Updated
4 years ago
Comments count
1
multi_to_single_fast5 hanging
Closed
4 years ago
Comments count
1
no space left on device [errno28]
Closed
4 years ago
Comments count
9
ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Could not convert Multi->Single for file type 'single-read' with path
Updated
4 years ago
Comments count
4
single_to_multi_fast5 compression is not working ?
Closed
4 years ago
Comments count
5
multi_to_single_fast5 command give syntax error
Closed
4 years ago
Comments count
5
Check if the Fast5 is multi-read or single-read
Closed
4 years ago
Comments count
1
How to get info from fast5?
Closed
4 years ago
Comments count
2
Can I subsample Nanopore fast5/fastq with this tool?
Closed
5 years ago
Comments count
7
sequencing_summary.txt for fast5_subset output
Closed
5 years ago
Comments count
4
Decompress/repack from VBZ to GZIP or something option compatible with squiggle tools
Closed
5 years ago
Comments count
6
Type incompatibility in Fast5Info constructor
Closed
5 years ago
Comments count
4
fast5_subset on vbz compressed fast5 files
Closed
5 years ago
Comments count
4
read_id does not exists in single fast5 reads
Closed
5 years ago
Comments count
2
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