miura

reproducible_bioimage_analysis

NEUBIAS_AnalystSchool2020

MultiStackRegistration

Modified version of MultiStackRegistration, for use from scripts.

GLCM2

calculates GLCM, to make it friendly for scripting.

CourseUtil

EMBL Image Processing and Analysis Course samples, links and plugins.

ijmacros

ImageJ macros, javascripts and jython codes for image processing and analysis

fiji

Fiji Is Just ImageJ

saiboukougaku

AnalyzeSkeleton

ImageJ/Fiji plugin to analyze 2D and 3D skeleton images

APEER-IJMacro-Example

APEER_IJM_EpidermalCell_Tracking

APEER_IJM_FindMaxima

APEER_IJM_Remove_FalseCellJunctions

APEER_MacroExtension

APEER_Python_2D_Plotter

BioImageAnalysisNotebooks

Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

bise

Biii development repository

content

A metadata commons to store research software metadata

CorrectBleach

ddev-gitpod

A full Drupal dev environment in a browser

drupal-ddevTest

emboBioImage2023_registration

Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course

gitprod-env-test

jikken_igaku2023

list-of-update-sites

The update sites ImageJ knows about automatically

MyFavoriteBIAtool_NEUBIAS_member

Bioimaging data analysis: The favorite imaging analysis tools of Neubias members - editor Kota Miura

testZIDA2

demo repo for the school

TheDigitalCell

Code associated with The Digital Cell

WG12_checklists_for_image_publishing

wrMTrck

Git collaboration site for wrMTrck - a plugin for ImageJ that allows tracking of several animals such as C. elegans in parallel. In addition, it allows to quantify swimming/thrashing/body-bends of C. elegans