Kota Miura's repositories
MultiStackRegistration
Modified version of MultiStackRegistration, for use from scripts.
CourseUtil
EMBL Image Processing and Analysis Course samples, links and plugins.
AnalyzeSkeleton
ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
BioImageAnalysisNotebooks
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
content
A metadata commons to store research software metadata
ddev-gitpod
A full Drupal dev environment in a browser
emboBioImage2023_registration
Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course
list-of-update-sites
The update sites ImageJ knows about automatically
MyFavoriteBIAtool_NEUBIAS_member
Bioimaging data analysis: The favorite imaging analysis tools of Neubias members - editor Kota Miura
TheDigitalCell
Code associated with The Digital Cell
wrMTrck
Git collaboration site for wrMTrck - a plugin for ImageJ that allows tracking of several animals such as C. elegans in parallel. In addition, it allows to quantify swimming/thrashing/body-bends of C. elegans