Kota Miura's starred repositories
SourceCodeSyntaxHighlight
Quick Look extension for highlight source code files on macOS 10.15 and later.
tabula-java
Extract tables from PDF files
itkwidgets
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
selfsupervised-denoising
High-Quality Self-Supervised Deep Image Denoising - Official TensorFlow implementation of the NeurIPS 2019 paper
napari-clusters-plotter
A napari plugin for clustering objects according to their properties.
imagej-server
A RESTful web server for ImageJ [EXPERIMENTAL]
2018-05-30-KRSCourseInBiomedicalImageAnalysisAndVisualization
Kitware Course in Biomedical Image Analysis and Visualization: ITK
ijl-utilities-wrappers
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
imagejmacromarkdown
Generate markdown notebooks from ImageJ Macro
ijp-imagej-launcher
IJP ImageJ Launcher is native launcher that starts ImageJ 2 or Fiji
ilastik4ij
ImageJ plugins to run ilastik workflows
example-script-collection
Example project demonstrating how to package ImageJ scripts into a single jar file
neubias-springer-book-2020
Code and images for the Springer book: Bioimage Data Analysis Workflows, edited by Kota Miura and Nataša Sladoje
MyFavouriteBIAStool_NEUBIAS
Favorite imaging analysis tools of NEUBIAS members - editor Kota Miura
xelatex-template
XeLaTeX template for Chinese documents.
atom-imagej-mode
Atom package for running ImageJ scripts in ImageJ/Fiji/ImageJ-server from Atom
GBI-LNMA_2024_image_analysis_and_image_repositories_course
GBI-LNMA 2024 course: Image analysis and data reuse through image repositories
ij-svg-roi
Class for creating imageJ ROIs from SVG paths
neubias-ts13-git-intro
An example git repository
scopem-public
Scopem related code publically available.