Kota Miura's repositories
ij_textbook1
textbook for the CMCI course (part 1)
bosc2015
Content from BOSC2015 unconference sessions on building successful open source bioinformatics communities
casperdatasets
CasperDatasets is a concise dataset modeling framework written in java. CasperDatasets was initially written in 2007, was added to the google code repository in 2009 (licensed under LGPL), and moved to github in Sept 2012.
CellClusterIndex
Compute Degree of Cell Clustering using Nucleus Channel
cluster
Scripts for managing distributed computing
epithelial_spheroids
Semi-automated analysis of epithelial spheroid polarity in 3D culture
gillespie-algorithm-python
Understand the Gillespie algorithm and build it yourself in Python
imglib2
A generic next-generation Java library for image processing
minimal-ij1-plugin
A simple Maven project implementing an ImageJ 1.x plugin
python-workshop-image-processing
Using Python for image processing and analysis
TANGO-1
TANGO software is an open-source software for Analysis of Nuclear Genome Organization.
test_arch
Archiving Trial
tldr
Simplified and community-driven man pages
TrackMate
TrackMate is your buddy for your everyday tracking.
TurboReg2
An adaptation of the ImageJ TurboReg plugin to ImageJ2 [UNMAINTAINED]